Andrew Baker

Guest scientist

Andrew graduated from the University of London in 1990 with a First Class BSc (Joint Honours) in pharmacology and toxicology and then studied for his PhD with the Leukaemia Research Fund at the University of Wales College Of Medicine, graduating in 1994. He then joined the group led by Professor Andrew Newby for his post-doctoral work in Cardiff and developed adenoviral vectors for gene delivery studies in the cardiovascular system. He then transferred to a lectureship at the University of Bristol (Bristol Heart Institute) to continue studies on adenovirus-mediated gene transfer to assess vascular function and gene therapy. In 1999, Dr. Baker joined Professor Anna Dominiczak at the University of Glasgow as a Senior Lecturer in Molecular Medicine, then as Reader and in 2005 as Professor of Molecular Medicine. Andrew was awarded the Blandsford Prize (1990) in pharmacology and the “Update in Thrombolysis Research” (Berlin, 1998) for his publication entitled “Divergent effects of tissue inhibitor of metalloproteinase-1, -2 or -3 overexpression on rat vascular smooth muscle cell invasion, proliferation and death in vitro: TIMP-3 promotes apoptosis” which was published in the Journal of Clinical Investigation. In 1999, he was awarded the British Cardiac Society Young Investigator Research Prize for his work “Gene therapy for vein grafting:  Tissue inhibitor of metalloproteinases-3 (TIMP-3) inhibits neointima formation in vitro and in vivo in part by promoting apoptosis”. He was awarded the MakDougall-Brisbane prize from the Royal Society of Edinburgh in 2008 and a fellowship from the Society (FRSE) in 2010.  Also in 2010 he was awarded an Outstanding Achievement Award from the European Society of Cardiology and in 2011 received a Royal Society Wolfson Research Merit Award.  From August 2010 to November 2011 he was Acting Director of the Institute for Cardiovascular and Medical Sciences at the University of Glasgow and in 2011 he was awarded a British Heart Foundation Chair of Translational Cardiovascular Medicine. In 2015 he was awarded a Fellowship of the Academy of Medical Sciences and from 1st October (FMedSci), 2015 Andrew relocated his BHF Chair to the Centre for Cardiovascular Science at the Queen’s Medical Research Institute, University of Edinburgh, UK. He became Head of the Centre for Cardiovascular Science in June 2017. He is a visiting Professor at CARIM from 2018.

My research tackles vascular injury. In particular, my lab is interested in understanding the events that occur in the aftermath of both acute and chronic injuries to the vessel wall at the molecular, cellular and whole organism level. Particular emphasis has been on the role of matrix matalloproteinases and non-coding RNA (both miRNA and long non-coding RNA). Once mechanisms are established, we use our in-depth expertise in interventional strategies to form potential new opportunities for therapeutic intervention. These are tested in cell culture models, in small and large animal models, and in human tissues (where available and relevant). If successful, we move to first-in-human trials. Currently, we are fully funded for a FIH trial in gene therapy for prevention of pathological vascular remodeling in autologous saphenous vein bypass grafting. We possess expertise more broadly in gene therapy and how to optimize vector systems for application to both gene therapy and development of viral-based vaccines. Finally, we also study cell-based approaches to vascular disease. In particular, we are interested in the pathways that drive endothelial cell formation using human embryonic stem cell-based systems. This provides an opportunity to understand the cues that define maturation and specification of endothelial cells, as well as understanding the utility of the cells from alleviation of ischemic cardiovascular disease.

University of Edinburgh
Centre for Cardiovascular Science
Queen’s Medical Research Institute
47 Little France Crescent, Edinburgh, EH16 4TJ

  • 2026
    • Hall, I. F., Aikawa, E., Sluimer, J., Baker, A. H., & Kovacic, J. C. (2026). Endothelial to mesenchymal transition in cardiovascular diseases: molecular insights and clinical perspectives. European Heart Journal, 47(10), 1144-1158. Article ehaf670. https://doi.org/10.1093/eurheartj/ehaf670
    • Baker, A. H., Riley, P. R., & Giacca, M. (2026). The Medical Research Council/British Heart Foundation Centre of Research Excellence in Advanced Cardiac Therapies (REACT). European Heart Journal, 47(4), 399-400. Article ehaf776. https://doi.org/10.1093/eurheartj/ehaf776
    • Baker, A. H., & de Vries, M. R. (2026). Insights into arteriovenous fistula (non)maturation: single-cell transcriptomics reveals new drivers of arteriovenous fistula remodeling. Kidney International, 109(1), 37-40. https://doi.org/10.1016/j.kint.2025.09.034
  • 2025
    • Tsarouchas, T. M., Vacante, F., Kazakou, N.-L., Wagstaff, L., Bennett, M., Zoupi, L., Gibson, E. M., Baker, A. H., & Williams, A. (2025). The LncRNA MYRACL Regulates Human Oligodendrocyte Maturation and Myelination. Molecular Therapy, 33(12), 6025-6032. https://doi.org/10.1016/j.ymthe.2025.08.011
    • Musolino, P. L., Rosser, S. J., Brittan, M., Newby, D. E., Berry, C., Riley, P. R., Giacca, M., Hajjar, R. J., & Baker, A. H. (2025). Gene therapy in cardiac and vascular diseases: a review of approaches to treat genetic and common cardiovascular diseases with novel gene-based therapeutics. Cardiovascular Research, 121(12), 1843-1855. https://doi.org/10.1093/cvr/cvaf109
    • Bennett, M., Ulitsky, I., & Baker, A. H. (2025). Missing 'lncs': how insufficient scrutiny can lead to misrepresentation of long non-coding RNAs (lncRNAs) and their function in cardiovascular disease. European Heart Journal, 46(35), 3434-3436. https://doi.org/10.1093/eurheartj/ehaf115
    • Brown, S. D., Malinowska, A. L., Bennett, M., Correa-Sánchez, A. F., Horcasitas Valencia, L. L., Lucignoli, A. P., Barton, A. K., Clark, L., Sluimer, J. C., Webster, S. P., Rodor, J., Newby, D. E., Cunningham, M., & Baker, A. H. (2025). Small Interfering RNA Therapy Targeting the Long Noncoding RNA SMILR for Therapeutic Intervention in Coronary Artery Bypass Graft Failure. JACC: Basic to Translational Science, Article 101364. https://doi.org/10.1016/j.jacbts.2025.101364
    • Monteiro, J. P., Vacante, F., De Pace, A. L., Bennett, M., Rodor, J., O'Carroll, D., Wu, J. C., Quertermous, T., & Baker, A. H. (2025). Targeting Cis-regulatory elements for CRISPR-mediated transcriptional activation of the human MIR503HG locus. Vascular Pharmacology, 160, Article 107521. https://doi.org/10.1016/j.vph.2025.107521
    • Luna Buitrago, D., Jover, E., Mameli, E., Mellis, D., Nosalski, R., Charlton, L., Bauza Sanso, R., Dunn-Davies, H., MacAskill, M. G., Tavares, A. A. S., Fletcher, A. J., Nash, J., Lopez-Andres, N., Dweck, M. R., Hadoke, P. W. F., Gilchrist, D. S., Wagner, B. D., Robinson, M. L., Baker, A. H., ... Caporali, A. (2025). The loss of microRNA-26b promotes aortic calcification through the regulation of cell-specific target genes. Cardiovascular Research, 121(11), 1778-1792. Article cvaf117. https://doi.org/10.1093/cvr/cvaf117
    • Vacante, F., Sanchez-Esteban, S., Tsarouchas, T., Rodor, J., Bennett, M., Carroll, M. S., Beqqali, A., & Baker, A. H. (2025). Effective Transcriptional Induction of the CARMN/miR-143/145 Complex Locus in Smooth Muscle Cells Using CRISPR Activation. Arteriosclerosis Thrombosis and Vascular Biology. Advance online publication. https://doi.org/10.1161/ATVBAHA.124.322353
    • Monteiro, J. P., Saha, D., Spiroski, A.-M., Mahesh, S., Kaltzis, P., Nadavallil, A., Janbandhu, V., Murray, N. J., Severi, F., De Pace, A. L., Sanchez-Esteban, S., Rodor, J., Beqqali, A., Bennett, M., Stewart, K., Thomson, A., Hadoke, P. W. F., Markose, D., Wilson-Kanamori, J. R., ... Baker, A. H. (2025). Loss of conserved long non-coding RNA MIR503HG leads to altered NOTCH pathway signalling and left ventricular non-compaction cardiomyopathy. Cardiovascular Research, 121(7), 988-991. Article cvaf043. https://doi.org/10.1093/cvr/cvaf043
    • Fließer, E., Jandl, K., Chen, S.-H., Wang, M.-T., Schupp, J. C., Kuebler, W. M., Baker, A. H., & Kwapiszewska, G. (2025). Transcriptional signatures of endothelial cells shape immune responses in cardiopulmonary health and disease. JCI INSIGHT, 10(10), Article e191059. https://doi.org/10.1172/jci.insight.191059
    • Brown, S. D., Rodor, J., & Baker, A. H. (2025). Targeted approach for next-generation coronary stents. European Heart Journal, 46(17), 1659-1661. https://doi.org/10.1093/eurheartj/ehaf007
    • Krilis, G., Beqqali, A., & Baker, A. H. (2025). ERC-funded Advanced Grant: creating molecular polypills. European Heart Journal, 46(14), 1288-1290. https://doi.org/10.1093/eurheartj/ehae866
    • Vacante, F., & Baker, A. H. (2025). Effective CRISPR modulation of complex non-coding RNA loci. Nature Reviews Cardiology, 22(3), 145. Article 145. https://doi.org/10.1038/s41569-025-01117-2
    • Rodor, J., Klimi, E., Brown, S. D., Krilis, G., Braga, L., Ring, N. A. R., Ballantyne, M. D., Kesidou, D., Dinh Cat, A. N., Miscianinov, V., Vacante, F., Miteva, K., Bennett, M., Beqqali, A., Giacca, M., Zacchigna, S., & Baker, A. H. (2025). Functional screening identifies miRNAs with a novel function inhibiting Vascular Smooth Muscle Cell proliferation. Molecular Therapy, 33(2), 615-630. https://doi.org/10.1016/j.ymthe.2024.12.037
    • Baker, A. H., Giacca, M., & Thum, T. (2025). miRNA discovery to therapy: The field is sufficiently mature to assess the value of miRNA-based therapeutics. Molecular Therapy, 33(1), 3-4. https://doi.org/10.1016/j.ymthe.2024.12.024
    • Brown, S. D., Klimi, E., Bakker, W. A. M., Beqqali, A., & Baker, A. H. (2025). Non-coding RNAs to treat vascular smooth muscle cell dysfunction. British Journal of Pharmacology, 182(2), 246-280. https://doi.org/10.1111/bph.16409
  • 2024
    • Devaux, Y., Zhang, L., Lumley, A. I., Karaduzovic-Hadziabdic, K., Mooser, V., Rousseau, S., Shoaib, M., Satagopam, V., Adilovic, M., Srivastava, P. K., Emanueli, C., Martelli, F., Greco, S., Badimon, L., Padro, T., Lustrek, M., Scholz, M., Rosolowski, M., Jordan, M., ... Firat, H. (2024). Development of a long noncoding RNA-based machine learning model to predict COVID-19 in-hospital mortality. Nature Communications, 15(1), Article 4259. https://doi.org/10.1038/s41467-024-47557-1
    • Karaduzovic-Hadziabdic, K., Adilovic, M., Zhang, L., Lumley, A. I., Shah, P., Shoaib, M., Satagopam, V., Srivastava, P. K., Emanueli, C., Greco, S., Madè, A., Padro, T., Domingo, P., Lustrek, M., Scholz, M., Rosolowski, M., Jordan, M., Benczik, B., Ágg, B., ... COVIRNA consortium (2024). Prediction of COVID-19 severity using machine learning. Clinical and Translational Medicine, 14(10), Article 70042. https://doi.org/10.1002/ctm2.70042
    • Xu, Y., Korayem, A., Cruz-Solbes, A. S., Chandel, N., Sakata, T., Mazurek, R., Mavropoulos, S. A., Kariya, T., Aikawa, T., Yamada, K. P., D'Escamard, V., V'Gangula, B., Baker, A. H., Ma, L., Björkegren, J. L. M., Fuster, V., Boehm, M., Fish, K. M., Tadros, R., ... Kovacic, J. C. (2024). Inhibition of endothelial-to-mesenchymal transition in a large animal preclinical arteriovenous fistula model leads to improved remodelling and reduced stenosis. Cardiovascular Research, 120(14), 1768-1779. https://doi.org/10.1093/cvr/cvae157
    • Zhang, Q., Yaoita, N., Tabuchi, A., Liu, S., Chen, S.-H., Li, Q., Hegemann, N., Li, C., Rodor, J., Timm, S., Laban, H., Finkel, T., Stevens, T., Alvarez, D. F., Erfinanda, L., de Perrot, M., Kucherenko, M. M., Knosalla, C., Ochs, M., ... Kuebler, W. M. (2024). Endothelial Heterogeneity in the Response to Autophagy Drives Small Vessel Muscularization in Pulmonary Hypertension. Circulation, 150(6), 466-487. https://doi.org/10.1161/CIRCULATIONAHA.124.068726
    • Passi, R., Cholewa-Waclaw, J., Wereski, R., Bennett, M., Veizades, S., Berkeley, B., Caporali, A., Li, Z., Rodor, J., Dewerchin, M., Mills, N. L., Beqqali, A., Brittan, M., & Baker, A. H. (2024). COVID-19 plasma induces subcellular remodelling within the pulmonary microvascular endothelium. Vascular Pharmacology, 154, Article 107277. https://doi.org/10.1016/j.vph.2024.107277
    • Hall, I. F., Kishta, F., Xu, Y., Baker, A. H., & Kovacic, J. C. (2024). Endothelial to mesenchymal transition: at the axis of cardiovascular health and disease. Cardiovascular Research, 120(3), 223-236. https://doi.org/10.1093/cvr/cvae021
    • Kesidou, D., Beqqali, A., & Baker, A. H. (2024). The dual effects of miR-222 in cardiac hypertrophy: bridging pathological and physiological paradigms. Cardiovascular Research, 120(3), 217-219. https://doi.org/10.1093/cvr/cvae033
    • Kesidou, D., Bennett, M., Monteiro, J. P., McCracken, I. R., Klimi, E., Rodor, J., Condie, A., Cowan, S., Caporali, A., Wit, J. B. M., Mountford, J. C., Brittan, M., Beqqali, A., & Baker, A. H. (2024). Extracellular vesicles from differentiated stem cells contain novel proangiogenic miRNAs and induce angiogenic responses at low doses. Molecular Therapy, 32(1), 185-203. https://doi.org/10.1016/j.ymthe.2023.11.023
    • Lin, A., Brittan, M., Baker, A. H., Dimmeler, S., Fisher, E. A., Sluimer, J. C., & Misra, A. (2024). Clonal Expansion in Cardiovascular Pathology. JACC: Basic to Translational Science, 9(1), 120-144. https://doi.org/10.1016/j.jacbts.2023.04.008
  • 2023
    • Passi, R., Brittan, M., & Baker, A. H. (2023). The role of the endothelium in severe acute respiratory syndrome coronavirus 2 infection and pathogenesis. Current Opinion in Physiology, 34(1), Article 100670. https://doi.org/10.1016/j.cophys.2023.100670
    • van Kuijk, K., McCracken, I. R., Tillie, R. J. H. A., Asselberghs, S. E. J., Kheder, D. A., Muitjens, S., Jin, H., Taylor, R. S., Schreur, R. W., Kuppe, C., Dobie, R., Ramachandran, P., Gijbels, M. J., Temmerman, L., Kirkwoord, P. M., Luyten, J., Li, Y. M., Noels, H., Goossens, P., ... Sluimer, J. C. (2023). Human and murine fibroblast single-cell transcriptomics reveals fibroblast clusters are differentially affected by ageing and serum cholesterol. Cardiovascular Research, 119(7), 1509-1523. https://doi.org/10.1093/cvr/cvad016
    • Becker, L. M., Chen, S.-H., Rodor, J., de Rooij, L. P. M. H., Baker, A. H., & Carmeliet, P. (2023). DECIPHERING ENDOTHELIAL HETEROGENEITY IN HEALTH AND DISEASE AT SINGLE CELL RESOLUTION: PROGRESS AND PERSPECTIVES. Cardiovascular Research, 119(1), 6-27. Article cvac018. https://doi.org/10.1093/cvr/cvac018
    • Boos, F., Oo, J. A., Warwick, T., Gunther, S., Ponce, J. I., Lopez, M., Rafii, D., Buchmann, G., Pham, M. D., Msheik, Z. S., Li, T. F., Seredinski, S., Haydar, S., Kashefiolasl, S., Plate, K. H., Behr, R., Mietsch, M., Krishnan, J., Pullamsetti, S. S., ... Leisegang, M. S. (2023). The endothelial-enriched lncRNA LINC00607 mediates angiogenic function. Basic Research in Cardiology, 118(1), Article 5. https://doi.org/10.1007/s00395-023-00978-3
  • 2022
    • Oo, J. A., Pálfi, K., Warwick, T., Wittig, I., Prieto-Garcia, C., Matkovic, V., Tomašković, I., Boos, F., Izquierdo Ponce, J., Teichmann, T., Petriukov, K., Haydar, S., Maegdefessel, L., Wu, Z., Pham, M. D., Krishnan, J., Baker, A. H., Günther, S., Ulrich, H. D., ... Brandes, R. P. (2022). Long non-coding RNA PCAT19 safeguards DNA in quiescent endothelial cells by preventing uncontrolled phosphorylation of RPA2. Cell Reports, 41(7), Article 111670. https://doi.org/10.1016/j.celrep.2022.111670
    • McCracken, I. R., Dobie, R., Bennett, M., Passi, R., Beqqali, A., Henderson, N. C., Mountford, J. C., Riley, P. R., Ponting, C. P., Smart, N., Brittan, M., & Baker, A. H. (2022). Mapping the developing human cardiac endothelium at single cell resolution identifies MECOM as a regulator of arteriovenous gene expression. Cardiovascular Research, 118(14), 2960-2972. https://doi.org/10.1093/cvr/cvac023
    • Jusic, A., Stellos, K., Ferreira, L., Baker, A. H., & Devaux, Y. (2022). (Epi)transcriptomics in cardiovascular and neurological complications of COVID-19. Journal of Molecular and Cellular Cardiology Plus, 1, Article 100013. https://doi.org/10.1016/j.jmccpl.2022.100013
    • Gladka, M. M., & Baker, A. H. (2022). Cutting a path to effective delivery of genome engineering machinery. Cardiovascular Research, 118(6), E42-E44. https://doi.org/10.1093/cvr/cvac034
    • Madrigal-Matute, J., de Bruijn, J., van Kuijk, K., Riascos-Bernal, D. F., Diaz, A., Tasset, I., Martín-Segura, A., Gijbels, M. J. J., Sander, B., Kaushik, S., Biessen, E. A. L., Tiano, S., Bourdenx, M., Krause, G. J., McCracken, I., Baker, A. H., Jin, H., Sibinga, N. E. S., Bravo-Cordero, J. J., ... Cuervo, A. M. (2022). Protective role of chaperone-mediated autophagy against atherosclerosis. Proceedings of the National Academy of Sciences of the United States of America, 119(14), Article e2121133119. https://doi.org/10.1073/pnas.2121133119